Ontology Addendum: Embedded Agency and Limits of Access

Ontology Addendum: Embedded Agency and Limits of Access

Purpose of This Addendum

This addendum clarifies an important boundary condition of the AMS ontology:
how agents (biological or human) interact with the substrate, and what they cannot do.

This clarification strengthens the ontology by explicitly rejecting hidden assumptions of “direct control” or metaphysical micromanagement.

Layered Access Principle

Within the AMS framework:

Agents embedded in the system can only act through emergent layers whose rules are already fixed by the substrate.

No agent—biological, technological, or human—has direct access to the fundamental degrees of freedom of the AMS itself.

All interaction is mediated.

Atoms as Blind Interfaces

Atoms, molecules, and chemical bonds are not conscious of the AMS or vortons.

They function as:

  • stable, coarse-grained interfaces,
  • whose lawful behaviour implicitly encodes deeper substrate dynamics,
  • without representing or “knowing” those dynamics.

In this sense, atomic and chemical processes are blind participants in AMS evolution:
they obey rules that arise from the substrate without awareness of it.

Constraint Injection: Endogenous vs Exogenous

Constraint-driven reconfiguration occurs in two primary modes:

Endogenous Constraint Injection

  • Constraints arise internally (e.g. DNA, cellular structures)
  • Replication and development proceed autonomously
  • Typical of biological systems

Exogenous Constraint Injection

  • Constraints are introduced externally (e.g. laboratory conditions, engineered materials)
  • Energy, fields, and environments are deliberately shaped
  • Typical of human technology and experimentation

In both cases:

  • No new ontological rules are added
  • No substrate boundary is crossed
  • The same AMS dynamics apply

No Runtime Boundary Crossing

The AMS ontology explicitly rejects the idea that agents can:

  • manually reconfigure vortons,
  • rewrite substrate laws,
  • or step outside the system’s runtime.

All action occurs within the allowed configuration space exposed by emergent layers.

This applies equally to:

  • life,
  • evolution,
  • science,
  • and engineering.

Implications

This principle explains why:

  • Life exploits templating but does not introduce it
  • Human engineering can achieve great complexity without altering fundamental laws
  • Scientific progress is powerful but bounded
  • Different domains (biology, chemistry, physics, technology) remain interoperable

The ontology remains lawful, closed, and self-consistent.

Summary

  • The AMS defines the deepest substrate
  • Vortons are fundamental stable configurations
  • Atoms are emergent interfaces, not substrate manipulators
  • Templating operates implicitly through accessible layers
  • All agency is embedded and mediated
  • No system-internal actor crosses the runtime boundary

This clarification is not a limitation of the ontology,
but a necessary condition for its coherence.

​

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